KEGG   PATHWAY: lcm00630
Entry
lcm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Latimeria chalumnae (coelacanth)
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcm00630  Glyoxylate and dicarboxylate metabolism
lcm00630

Module
lcm_M00621  Glycine cleavage system [PATH:lcm00630]
lcm_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lcm00630]
Other DBs
GO: 0046487 0043648
Organism
Latimeria chalumnae (coelacanth) [GN:lcm]
Gene
102357659  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
102347386  ACSS2; acyl-CoA synthetase short-chain family member 2 [KO:K01895] [EC:6.2.1.1]
102355857  ACSS1; acyl-CoA synthetase short-chain family member 1 [KO:K01895] [EC:6.2.1.1]
102353049  acetyl-coenzyme A synthetase, cytoplasmic-like [KO:K01895] [EC:6.2.1.1]
102357680  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
102351122  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
102345608  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
102357273  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
102346708  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
102350451  ACAT2; acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
102347383  ACAT1; acetyl-CoA acetyltransferase 1 [KO:K00626] [EC:2.3.1.9]
102358100  MCEE; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
102353895  PCCA; propionyl-CoA carboxylase alpha subunit [KO:K01965] [EC:6.4.1.3]
102364951  PCCB; propionyl-CoA carboxylase beta subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
102348247  MUT; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
102364087  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
102363524  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
102347899  CAT; catalase [KO:K03781] [EC:1.11.1.6]
102348917  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
102347981  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
102349186  glyoxylate reductase/hydroxypyruvate reductase-like [KO:K00049] [EC:1.1.1.79 1.1.1.81]
102367226  PGP; phosphoglycolate phosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
102364803  AGXT; alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
102361837  GLUL; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
102357685  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
102355076  SHMT2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
102353118  SHMT1; serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
102355395  GLDC; glycine decarboxylase [KO:K00281] [EC:1.4.4.2]
102365617  AMT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
102356534  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
102363238  GCSH; glycine cleavage system protein H [KO:K02437]
102365693  HYI; hydroxypyruvate isomerase (putative) [KO:K01816] [EC:5.3.1.22]
102347757  GLYCTK; glycerate kinase [KO:K11529] [EC:2.7.1.165]
102362318  HOGA1; 4-hydroxy-2-oxoglutarate aldolase 1 [KO:K18123] [EC:4.1.3.16]
102347585  AFMID; arylformamidase [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lcm00010  Glycolysis / Gluconeogenesis
lcm00020  Citrate cycle (TCA cycle)
lcm00030  Pentose phosphate pathway
lcm00053  Ascorbate and aldarate metabolism
lcm00071  Fatty acid degradation
lcm00230  Purine metabolism
lcm00250  Alanine, aspartate and glutamate metabolism
lcm00260  Glycine, serine and threonine metabolism
lcm00620  Pyruvate metabolism
lcm00750  Vitamin B6 metabolism
lcm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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