KEGG   PATHWAY: lev00020
Entry
lev00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leisingera sp. NJS201
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lev00020  Citrate cycle (TCA cycle)
lev00020

Module
lev_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lev00020]
lev_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lev00020]
lev_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lev00020]
lev_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lev00020]
lev_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lev00020]
Other DBs
GO: 0006099
Organism
Leisingera sp. NJS201 [GN:lev]
Gene
ETW23_10075  citrate synthase [KO:K01647] [EC:2.3.3.1]
ETW23_10645  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ETW23_14360  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ETW23_16120  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ETW23_16125  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
ETW23_10225  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETW23_16145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETW23_16110  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ETW23_16100  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ETW23_16010  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ETW23_16005  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ETW23_16020  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ETW23_16015  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
ETW23_11120  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ETW23_16095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ETW23_06345  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ETW23_18030  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ETW23_22360  transketolase [KO:K00163] [EC:1.2.4.1]
ETW23_10305  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ETW23_10315  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
ETW23_10320  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lev00010  Glycolysis / Gluconeogenesis
lev00053  Ascorbate and aldarate metabolism
lev00061  Fatty acid biosynthesis
lev00071  Fatty acid degradation
lev00190  Oxidative phosphorylation
lev00220  Arginine biosynthesis
lev00250  Alanine, aspartate and glutamate metabolism
lev00280  Valine, leucine and isoleucine degradation
lev00350  Tyrosine metabolism
lev00470  D-Amino acid metabolism
lev00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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