KEGG   PATHWAY: lib00020
Entry
lib00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella israelensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lib00020  Citrate cycle (TCA cycle)
lib00020

Module
lib_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lib00020]
lib_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lib00020]
lib_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lib00020]
lib_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lib00020]
Other DBs
GO: 0006099
Organism
Legionella israelensis [GN:lib]
Gene
E4T55_00715  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E4T55_14680  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E4T55_11900  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E4T55_12730  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
E4T55_01865  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E4T55_09805  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E4T55_09810  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E4T55_00775  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4T55_14500  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4T55_14340  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
E4T55_14345  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
E4T55_09820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E4T55_09815  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E4T55_09795  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E4T55_09800  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E4T55_09785  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E4T55_09790  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E4T55_09000  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E4T55_12215  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E4T55_09700  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
E4T55_05540  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
E4T55_00785  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E4T55_00780  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lib00010  Glycolysis / Gluconeogenesis
lib00061  Fatty acid biosynthesis
lib00071  Fatty acid degradation
lib00190  Oxidative phosphorylation
lib00220  Arginine biosynthesis
lib00250  Alanine, aspartate and glutamate metabolism
lib00280  Valine, leucine and isoleucine degradation
lib00350  Tyrosine metabolism
lib00470  D-Amino acid metabolism
lib00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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