KEGG   PATHWAY: lit00020
Entry
lit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Qingshengfaniella alkalisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lit00020  Citrate cycle (TCA cycle)
lit00020

Module
lit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lit00020]
lit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lit00020]
lit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lit00020]
lit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lit00020]
lit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lit00020]
Other DBs
GO: 0006099
Organism
Qingshengfaniella alkalisoli [GN:lit]
Gene
FPZ52_06120  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FPZ52_04155  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FPZ52_05990  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FPZ52_01320  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FPZ52_01315  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FPZ52_14720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FPZ52_01305  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FPZ52_01330  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FPZ52_01335  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FPZ52_01375  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FPZ52_01380  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FPZ52_01365  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FPZ52_01370  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FPZ52_05700  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FPZ52_01345  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FPZ52_03030  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FPZ52_00630  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FPZ52_14730  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FPZ52_14725  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lit00010  Glycolysis / Gluconeogenesis
lit00053  Ascorbate and aldarate metabolism
lit00061  Fatty acid biosynthesis
lit00071  Fatty acid degradation
lit00190  Oxidative phosphorylation
lit00220  Arginine biosynthesis
lit00250  Alanine, aspartate and glutamate metabolism
lit00280  Valine, leucine and isoleucine degradation
lit00350  Tyrosine metabolism
lit00470  D-Amino acid metabolism
lit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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