KEGG   PATHWAY: llz00020
Entry
llz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lysobacter luteus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
llz00020  Citrate cycle (TCA cycle)
llz00020

Module
llz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:llz00020]
llz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:llz00020]
llz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:llz00020]
llz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:llz00020]
llz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:llz00020]
Other DBs
GO: 0006099
Organism
Lysobacter luteus [GN:llz]
Gene
LYB30171_00600  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
LYB30171_01410  acn; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
LYB30171_00072  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LYB30171_01828  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
LYB30171_01489  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LYB30171_01490  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LYB30171_00425  sthA; Soluble pyridine nucleotide transhydrogenase [KO:K00382] [EC:1.8.1.4]
LYB30171_01491  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LYB30171_02212  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LYB30171_02213  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LYB30171_00956  Succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
LYB30171_01267  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LYB30171_01268  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LYB30171_01265  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LYB30171_01266  hypothetical protein [KO:K00242]
LYB30171_01248  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
LYB30171_01485  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LYB30171_02037  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LYB30171_00745  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
LYB30171_00355  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LYB30171_00423  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
llz00010  Glycolysis / Gluconeogenesis
llz00053  Ascorbate and aldarate metabolism
llz00061  Fatty acid biosynthesis
llz00071  Fatty acid degradation
llz00190  Oxidative phosphorylation
llz00220  Arginine biosynthesis
llz00250  Alanine, aspartate and glutamate metabolism
llz00280  Valine, leucine and isoleucine degradation
llz00350  Tyrosine metabolism
llz00470  D-Amino acid metabolism
llz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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