KEGG   PATHWAY: lni00020
Entry
lni00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter sp. SGAir0187
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lni00020  Citrate cycle (TCA cycle)
lni00020

Module
lni_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lni00020]
lni_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lni00020]
lni_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lni00020]
lni_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lni00020]
lni_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lni00020]
Other DBs
GO: 0006099
Organism
Enterobacter sp. SGAir0187 [GN:lni]
Gene
CWR52_05885  citrate synthase [KO:K01647] [EC:2.3.3.1]
CWR52_22540  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CWR52_08405  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CWR52_00525  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CWR52_03395  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CWR52_05850  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CWR52_05845  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CWR52_08430  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWR52_05835  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CWR52_05840  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CWR52_05860  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CWR52_05855  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CWR52_05870  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
CWR52_05865  succinate dehydrogenase membrane anchor subunit [KO:K00242]
CWR52_10495  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CWR52_10500  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CWR52_10505  frdC; fumarate reductase subunit FrdC [KO:K00246]
CWR52_10510  frdD; fumarate reductase subunit FrdD [KO:K00247]
CWR52_02355  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CWR52_20835  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CWR52_02350  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CWR52_02660  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
CWR52_14935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CWR52_19770  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CWR52_14160  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CWR52_08440  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CWR52_08435  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CWR52_00195  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lni00010  Glycolysis / Gluconeogenesis
lni00053  Ascorbate and aldarate metabolism
lni00061  Fatty acid biosynthesis
lni00071  Fatty acid degradation
lni00190  Oxidative phosphorylation
lni00220  Arginine biosynthesis
lni00250  Alanine, aspartate and glutamate metabolism
lni00280  Valine, leucine and isoleucine degradation
lni00350  Tyrosine metabolism
lni00470  D-Amino acid metabolism
lni00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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