KEGG   PATHWAY: lph00020
Entry
lph00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lph00020  Citrate cycle (TCA cycle)
lph00020

Module
lph_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lph00020]
lph_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lph00020]
lph_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lph00020]
lph_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lph00020]
Other DBs
GO: 0006099
Organism
Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1) [GN:lph]
Gene
LPV_1532  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LPV_1954  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LPV_0942  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
LPV_0642  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
LPV_0643  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
LPV_1634  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
LPV_1084  korA; 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LPV_1085  2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LPV_0645  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
LPV_0644  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
LPV_0640  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LPV_0641  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
LPV_0637  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
LPV_0638  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
LPV_3313  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
LPV_2625  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPV_1636  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
LPV_1635  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lph00010  Glycolysis / Gluconeogenesis
lph00053  Ascorbate and aldarate metabolism
lph00061  Fatty acid biosynthesis
lph00071  Fatty acid degradation
lph00190  Oxidative phosphorylation
lph00220  Arginine biosynthesis
lph00250  Alanine, aspartate and glutamate metabolism
lph00280  Valine, leucine and isoleucine degradation
lph00350  Tyrosine metabolism
lph00470  D-Amino acid metabolism
lph00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system