KEGG   PATHWAY: lpn00020
Entry
lpn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpn00020  Citrate cycle (TCA cycle)
lpn00020

Module
lpn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lpn00020]
lpn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpn00020]
lpn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lpn00020]
lpn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpn00020]
Other DBs
GO: 0006099
Organism
Legionella pneumophila subsp. pneumophila Philadelphia 1 (serogroup 1) [GN:lpn]
Gene
lpg1415  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
lpg1690  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
lpg0816  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
lpg0532  sucA; 2-oxoglutarate dehydrogenase E1 component) [KO:K00164] [EC:1.2.4.2]
lpg0533  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
lpg1502  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
lpg0947  2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
lpg0948  korB; 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
lpg0535  sucD; succinyl CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
lpg0534  sucC; succinyl CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
lpg0530  sdhA; succinate dehydrogenase flavoprotein subunit A [KO:K00239] [EC:1.3.5.1]
lpg0531  sdhB; succinate dehydrogenase iron-sulfur protein subunit B [KO:K00240] [EC:1.3.5.1]
lpg0528  sdhC; succinate dehydrogenase cytochrome b556 subunit C [KO:K00241]
lpg0529  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein subunit D [KO:K00242]
lpg2937  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
lpg2352  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
lpg2664  acetyl-CoA carboxylase, biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
lpg0466  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
lpg1504  aceE; pyruvate dehydrogenase E1 component oxidoreductase protein AceE [KO:K00163] [EC:1.2.4.1]
lpg1503  aceF; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpn00010  Glycolysis / Gluconeogenesis
lpn00061  Fatty acid biosynthesis
lpn00071  Fatty acid degradation
lpn00190  Oxidative phosphorylation
lpn00220  Arginine biosynthesis
lpn00250  Alanine, aspartate and glutamate metabolism
lpn00280  Valine, leucine and isoleucine degradation
lpn00350  Tyrosine metabolism
lpn00470  D-Amino acid metabolism
lpn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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