KEGG   PATHWAY: lpp00020
Entry
lpp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella pneumophila Paris (serogroup 1)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpp00020  Citrate cycle (TCA cycle)
lpp00020

Module
lpp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lpp00020]
lpp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpp00020]
lpp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lpp00020]
lpp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpp00020]
Other DBs
GO: 0006099
Organism
Legionella pneumophila Paris (serogroup 1) [GN:lpp]
Gene
lpp1370  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
lpp1659  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
lpp0878  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
lpp0597  sucA; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
lpp0598  sucB; dihydrolipoamide succinyltransferase, E2 subunit [KO:K00658] [EC:2.3.1.61]
lpp1459  lpd; Lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
lpp1009  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
lpp1010  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
lpp0600  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
lpp0599  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
lpp0595  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
lpp0596  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
lpp0593  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
lpp0594  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
lpp3005  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
lpp2301  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
lpp2718  hypothetical protein [KO:K01959] [EC:6.4.1.1]
lpp0531  dcoA; oxaloacetate decarboxylase alpha-chain [KO:K01960] [EC:6.4.1.1]
lpp1461  aceE; Pyruvate dehydrogenase (decarboxylase component) E1p [KO:K00163] [EC:1.2.4.1]
lpp1460  aceF; Pyruvate dehydrogenase (dihydrolipoyltransacetylase component) E2p [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpp00010  Glycolysis / Gluconeogenesis
lpp00061  Fatty acid biosynthesis
lpp00071  Fatty acid degradation
lpp00190  Oxidative phosphorylation
lpp00220  Arginine biosynthesis
lpp00250  Alanine, aspartate and glutamate metabolism
lpp00280  Valine, leucine and isoleucine degradation
lpp00350  Tyrosine metabolism
lpp00470  D-Amino acid metabolism
lpp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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