KEGG   PATHWAY: lue00020
Entry
lue00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lysobacter oculi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lue00020  Citrate cycle (TCA cycle)
lue00020

Module
lue_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lue00020]
lue_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lue00020]
lue_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lue00020]
lue_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lue00020]
Other DBs
GO: 0006099
Organism
Lysobacter oculi [GN:lue]
Gene
DCD74_00210  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DCD74_04135  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DCD74_04140  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DCD74_11000  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DCD74_02665  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
DCD74_03795  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DCD74_03790  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DCD74_11475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DCD74_03785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DCD74_08040  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DCD74_08045  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DCD74_04655  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DCD74_04650  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DCD74_04665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DCD74_04660  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DCD74_04755  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DCD74_03820  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
DCD74_01710  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DCD74_00655  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DCD74_09055  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DCD74_11465  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lue00010  Glycolysis / Gluconeogenesis
lue00053  Ascorbate and aldarate metabolism
lue00061  Fatty acid biosynthesis
lue00071  Fatty acid degradation
lue00190  Oxidative phosphorylation
lue00220  Arginine biosynthesis
lue00250  Alanine, aspartate and glutamate metabolism
lue00280  Valine, leucine and isoleucine degradation
lue00350  Tyrosine metabolism
lue00470  D-Amino acid metabolism
lue00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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