KEGG   PATHWAY: lus00020
Entry
lus00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Luteimonas yindakuii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lus00020  Citrate cycle (TCA cycle)
lus00020

Module
lus_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lus00020]
lus_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lus00020]
lus_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lus00020]
lus_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lus00020]
lus_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lus00020]
Other DBs
GO: 0006099
Organism
Luteimonas yindakuii [GN:lus]
Gene
E5843_11245  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
E5843_04030  citrate synthase [KO:K01647] [EC:2.3.3.1]
E5843_08035  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E5843_08020  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E5843_00250  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E5843_10665  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
E5843_08415  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E5843_08420  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E5843_08425  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5843_13240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5843_12420  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E5843_12425  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E5843_00175  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
E5843_10175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E5843_10170  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E5843_10185  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E5843_10180  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E5843_08885  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E5843_08385  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E5843_11255  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E5843_04300  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
E5843_13505  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E5843_13245  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lus00010  Glycolysis / Gluconeogenesis
lus00061  Fatty acid biosynthesis
lus00071  Fatty acid degradation
lus00190  Oxidative phosphorylation
lus00220  Arginine biosynthesis
lus00250  Alanine, aspartate and glutamate metabolism
lus00280  Valine, leucine and isoleucine degradation
lus00350  Tyrosine metabolism
lus00470  D-Amino acid metabolism
lus00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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