KEGG   PATHWAY: lww00020
Entry
lww00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptonychotes weddellii (Weddell seal)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lww00020  Citrate cycle (TCA cycle)
lww00020

Module
lww_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lww00020]
lww_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lww00020]
lww_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lww00020]
lww_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lww00020]
lww_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lww00020]
Other DBs
GO: 0006099
Organism
Leptonychotes weddellii (Weddell seal) [GN:lww]
Gene
102737407  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
102744057  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
102738796  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
102744469  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
102746567  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X2 [KO:K00031] [EC:1.1.1.42]
102739921  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
102748272  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102732860  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102740353  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
102727715  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
102744475  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
102735003  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
102742532  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102731990  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102749015  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102736170  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102730690  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102741714  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
102748861  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
102736830  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
102727267  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
102741370  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
102747711  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
102745136  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102749944  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102740433  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
102734133  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
102742573  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
102745780  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
102749675  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
102743413  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
102748509  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
102739879  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lww00010  Glycolysis / Gluconeogenesis
lww00053  Ascorbate and aldarate metabolism
lww00061  Fatty acid biosynthesis
lww00062  Fatty acid elongation
lww00071  Fatty acid degradation
lww00190  Oxidative phosphorylation
lww00220  Arginine biosynthesis
lww00250  Alanine, aspartate and glutamate metabolism
lww00280  Valine, leucine and isoleucine degradation
lww00350  Tyrosine metabolism
lww00470  D-Amino acid metabolism
lww00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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