KEGG   PATHWAY: mars00020
Entry
mars00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacterium aestuarii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mars00020  Citrate cycle (TCA cycle)
mars00020

Module
mars_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mars00020]
mars_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mars00020]
mars_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mars00020]
mars_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mars00020]
mars_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mars00020]
Other DBs
GO: 0006099
Organism
Marinobacterium aestuarii [GN:mars]
Gene
A8C75_14620  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A8C75_07485  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A8C75_17240  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A8C75_12715  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A8C75_00900  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
A8C75_12170  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A8C75_07510  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A8C75_07515  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A8C75_07520  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8C75_07530  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A8C75_07525  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A8C75_07500  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A8C75_07505  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A8C75_07490  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A8C75_07495  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A8C75_06050  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A8C75_18390  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A8C75_09385  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A8C75_07480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A8C75_07165  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A8C75_02425  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
A8C75_02420  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
A8C75_21720  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A8C75_09115  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A8C75_05080  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A8C75_05085  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mars00010  Glycolysis / Gluconeogenesis
mars00053  Ascorbate and aldarate metabolism
mars00061  Fatty acid biosynthesis
mars00071  Fatty acid degradation
mars00190  Oxidative phosphorylation
mars00220  Arginine biosynthesis
mars00250  Alanine, aspartate and glutamate metabolism
mars00280  Valine, leucine and isoleucine degradation
mars00350  Tyrosine metabolism
mars00470  D-Amino acid metabolism
mars00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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