KEGG   PATHWAY: masw00020
Entry
masw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Massilia sp. WG5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
masw00020  Citrate cycle (TCA cycle)
masw00020

Module
masw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:masw00020]
masw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:masw00020]
masw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:masw00020]
masw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:masw00020]
masw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:masw00020]
Other DBs
GO: 0006099
Organism
Massilia sp. WG5 [GN:masw]
Gene
AM586_20775  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AM586_27395  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AM586_20825  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AM586_00985  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AM586_08855  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AM586_20625  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AM586_20620  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AM586_20610  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AM586_00350  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AM586_15560  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AM586_23090  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AM586_25385  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AM586_25390  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AM586_04090  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AM586_20790  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AM586_20785  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AM586_20800  succinate dehydrogenase [KO:K00241]
AM586_20795  succinate dehydrogenase [KO:K00242]
AM586_07030  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AM586_07895  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AM586_20810  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AM586_00205  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AM586_23100  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AM586_20070  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AM586_20065  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AM586_20060  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AM586_23095  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
masw00010  Glycolysis / Gluconeogenesis
masw00053  Ascorbate and aldarate metabolism
masw00061  Fatty acid biosynthesis
masw00071  Fatty acid degradation
masw00190  Oxidative phosphorylation
masw00220  Arginine biosynthesis
masw00250  Alanine, aspartate and glutamate metabolism
masw00280  Valine, leucine and isoleucine degradation
masw00350  Tyrosine metabolism
masw00470  D-Amino acid metabolism
masw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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