KEGG   PATHWAY: masz00020
Entry
masz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoduganella armeniaca
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
masz00020  Citrate cycle (TCA cycle)
masz00020

Module
masz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:masz00020]
masz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:masz00020]
masz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:masz00020]
masz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:masz00020]
masz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:masz00020]
Other DBs
GO: 0006099
Organism
Pseudoduganella armeniaca [GN:masz]
Gene
C9I28_21390  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C9I28_21440  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C9I28_09890  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C9I28_09900  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C9I28_21335  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C9I28_21330  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C9I28_00745  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C9I28_21320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C9I28_23520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C9I28_04385  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C9I28_04380  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C9I28_21485  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C9I28_21405  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C9I28_21400  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C9I28_21415  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C9I28_21410  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C9I28_08440  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C9I28_09095  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C9I28_21425  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C9I28_00570  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C9I28_23530  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C9I28_23525  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
masz00010  Glycolysis / Gluconeogenesis
masz00053  Ascorbate and aldarate metabolism
masz00061  Fatty acid biosynthesis
masz00071  Fatty acid degradation
masz00190  Oxidative phosphorylation
masz00220  Arginine biosynthesis
masz00250  Alanine, aspartate and glutamate metabolism
masz00280  Valine, leucine and isoleucine degradation
masz00350  Tyrosine metabolism
masz00470  D-Amino acid metabolism
masz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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