KEGG   PATHWAY: mbas00020
Entry
mbas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Labilibaculum antarcticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbas00020  Citrate cycle (TCA cycle)
mbas00020

Module
mbas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbas00020]
mbas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbas00020]
mbas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbas00020]
mbas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbas00020]
mbas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbas00020]
Other DBs
GO: 0006099
Organism
Labilibaculum antarcticum [GN:mbas]
Gene
ALGA_2993  hypothetical protein [KO:K01647] [EC:2.3.3.1]
ALGA_0295  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
ALGA_0296  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ALGA_2572  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ALGA_3955  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
ALGA_0534  3-isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
ALGA_2672  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ALGA_1024  hypothetical protein [KO:K00658] [EC:2.3.1.61]
ALGA_2671  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
ALGA_0754  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
ALGA_0007  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
ALGA_2389  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ALGA_1072  MFS transporter [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ALGA_2644  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ALGA_1071  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ALGA_2645  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ALGA_2646  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
ALGA_2643  ferredoxin [KO:K00176] [EC:1.2.7.3]
ALGA_2001  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ALGA_2002  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ALGA_1569  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
ALGA_1568  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ALGA_1570  succinate dehydrogenase [KO:K00241]
ALGA_4224  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ALGA_3450  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ALGA_2100  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ALGA_2998  carboxylase [KO:K01960] [EC:6.4.1.1]
ALGA_3229  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ALGA_1355  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
ALGA_1354  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
ALGA_1357  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
ALGA_1356  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
ALGA_2538  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbas00010  Glycolysis / Gluconeogenesis
mbas00053  Ascorbate and aldarate metabolism
mbas00061  Fatty acid biosynthesis
mbas00071  Fatty acid degradation
mbas00190  Oxidative phosphorylation
mbas00220  Arginine biosynthesis
mbas00250  Alanine, aspartate and glutamate metabolism
mbas00280  Valine, leucine and isoleucine degradation
mbas00350  Tyrosine metabolism
mbas00470  D-Amino acid metabolism
mbas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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