KEGG   PATHWAY: mee00020
Entry
mee00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methylobacterium currus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mee00020  Citrate cycle (TCA cycle)
mee00020

Module
mee_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mee00020]
mee_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mee00020]
mee_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mee00020]
mee_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mee00020]
mee_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mee00020]
Other DBs
GO: 0006099
Organism
Methylobacterium currus [GN:mee]
Gene
DA075_13390  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DA075_23620  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
DA075_31595  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DA075_01655  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DA075_12045  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DA075_12040  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DA075_12030  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA075_04155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA075_26150  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA075_06270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA075_15650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DA075_12050  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DA075_12055  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DA075_04560  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
DA075_14845  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DA075_14840  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DA075_14855  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DA075_14850  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DA075_02050  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DA075_17795  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DA075_12060  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DA075_16420  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DA075_24055  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DA075_12355  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
DA075_06295  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DA075_06290  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DA075_00890  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DA075_06275  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
DA075_15645  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mee00010  Glycolysis / Gluconeogenesis
mee00053  Ascorbate and aldarate metabolism
mee00061  Fatty acid biosynthesis
mee00071  Fatty acid degradation
mee00190  Oxidative phosphorylation
mee00220  Arginine biosynthesis
mee00250  Alanine, aspartate and glutamate metabolism
mee00280  Valine, leucine and isoleucine degradation
mee00350  Tyrosine metabolism
mee00470  D-Amino acid metabolism
mee00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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