KEGG   PATHWAY: mff00020
Entry
mff00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mariniblastus fucicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mff00020  Citrate cycle (TCA cycle)
mff00020

Module
mff_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mff00020]
mff_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mff00020]
mff_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mff00020]
mff_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mff00020]
Other DBs
GO: 0006099
Organism
Mariniblastus fucicola [GN:mff]
Gene
MFFC18_31680  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MFFC18_25360  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
MFFC18_51230  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MFFC18_16420  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MFFC18_16410  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MFFC18_10780  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MFFC18_16400  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MFFC18_36060  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MFFC18_36070  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MFFC18_11470  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MFFC18_11480  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MFFC18_07290  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MFFC18_07280  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MFFC18_07300  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
MFFC18_13770  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MFFC18_44480  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MFFC18_12020  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
MFFC18_29490  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MFFC18_29500  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mff00010  Glycolysis / Gluconeogenesis
mff00053  Ascorbate and aldarate metabolism
mff00061  Fatty acid biosynthesis
mff00071  Fatty acid degradation
mff00190  Oxidative phosphorylation
mff00220  Arginine biosynthesis
mff00250  Alanine, aspartate and glutamate metabolism
mff00280  Valine, leucine and isoleucine degradation
mff00350  Tyrosine metabolism
mff00470  D-Amino acid metabolism
mff00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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