KEGG   PATHWAY: mhae00020
Entry
mhae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica D153
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhae00020  Citrate cycle (TCA cycle)
mhae00020

Module
mhae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhae00020]
mhae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhae00020]
mhae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhae00020]
mhae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhae00020]
mhae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhae00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica D153 [GN:mhae]
Gene
F382_01420  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
F382_01410  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F382_01415  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F382_02350  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
F382_02355  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
F382_00180  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
F382_02365  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
F382_02360  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F382_08470  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
F382_08475  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
F382_08480  fumarate reductase [KO:K00246]
F382_08485  fumarate reductase [KO:K00247]
F382_08555  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F382_05065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F382_13095  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
F382_00170  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
F382_00175  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhae00010  Glycolysis / Gluconeogenesis
mhae00053  Ascorbate and aldarate metabolism
mhae00061  Fatty acid biosynthesis
mhae00071  Fatty acid degradation
mhae00190  Oxidative phosphorylation
mhae00220  Arginine biosynthesis
mhae00250  Alanine, aspartate and glutamate metabolism
mhae00280  Valine, leucine and isoleucine degradation
mhae00350  Tyrosine metabolism
mhae00470  D-Amino acid metabolism
mhae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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