KEGG   PATHWAY: mhao00020
Entry
mhao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica D174
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhao00020  Citrate cycle (TCA cycle)
mhao00020

Module
mhao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhao00020]
mhao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhao00020]
mhao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhao00020]
mhao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhao00020]
mhao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhao00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica D174 [GN:mhao]
Gene
J451_01950  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
J451_01960  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J451_01955  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J451_01040  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
J451_01035  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
J451_00150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J451_01025  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
J451_01030  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J451_07510  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J451_07505  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
J451_07500  fumarate reductase [KO:K00246]
J451_07495  fumarate reductase [KO:K00247]
J451_07425  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J451_05305  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J451_13330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
J451_00140  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
J451_00145  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhao00010  Glycolysis / Gluconeogenesis
mhao00053  Ascorbate and aldarate metabolism
mhao00061  Fatty acid biosynthesis
mhao00071  Fatty acid degradation
mhao00190  Oxidative phosphorylation
mhao00220  Arginine biosynthesis
mhao00250  Alanine, aspartate and glutamate metabolism
mhao00280  Valine, leucine and isoleucine degradation
mhao00350  Tyrosine metabolism
mhao00470  D-Amino acid metabolism
mhao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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