KEGG   PATHWAY: mhaq00020
Entry
mhaq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica 89010807N
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhaq00020  Citrate cycle (TCA cycle)
mhaq00020

Module
mhaq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhaq00020]
mhaq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhaq00020]
mhaq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhaq00020]
mhaq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhaq00020]
mhaq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhaq00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica 89010807N [GN:mhaq]
Gene
WC39_07005  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WC39_07015  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WC39_07010  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WC39_06065  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
WC39_06060  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WC39_07835  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WC39_06050  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
WC39_06055  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WC39_00735  fumarate reductase [KO:K00244] [EC:1.3.5.1]
WC39_00740  fumarate reductase [KO:K00245] [EC:1.3.5.1]
WC39_00745  fumarate reductase [KO:K00246]
WC39_00750  fumarate reductase [KO:K00247]
WC39_00815  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WC39_03015  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WC39_08670  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
WC39_07845  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WC39_07840  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhaq00010  Glycolysis / Gluconeogenesis
mhaq00053  Ascorbate and aldarate metabolism
mhaq00061  Fatty acid biosynthesis
mhaq00071  Fatty acid degradation
mhaq00190  Oxidative phosphorylation
mhaq00220  Arginine biosynthesis
mhaq00250  Alanine, aspartate and glutamate metabolism
mhaq00280  Valine, leucine and isoleucine degradation
mhaq00350  Tyrosine metabolism
mhaq00470  D-Amino acid metabolism
mhaq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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