KEGG   PATHWAY: mhas00020
Entry
mhas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium hassiacum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhas00020  Citrate cycle (TCA cycle)
mhas00020

Module
mhas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhas00020]
mhas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhas00020]
mhas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhas00020]
mhas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhas00020]
mhas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhas00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium hassiacum [GN:mhas]
Gene
MHAS_03499  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MHAS_03503  citA; Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MHAS_02118  acnA; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
MHAS_00419  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MHAS_02805  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MHAS_04823  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MHAS_01235  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MHAS_01236  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MHAS_03380  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MHAS_03381  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MHAS_00434  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MHAS_04585  sdhA_2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MHAS_00433  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MHAS_04584  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MHAS_00436  sdhC; Succinate dehydrogenase 2 membrane subunit SdhC [KO:K00241]
MHAS_00435  hypothetical protein [KO:K00242]
MHAS_03222  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MHAS_02813  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MHAS_00971  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
MHAS_04002  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MHAS_01453  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MHAS_01491  dlaT; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhas00010  Glycolysis / Gluconeogenesis
mhas00061  Fatty acid biosynthesis
mhas00071  Fatty acid degradation
mhas00190  Oxidative phosphorylation
mhas00220  Arginine biosynthesis
mhas00250  Alanine, aspartate and glutamate metabolism
mhas00280  Valine, leucine and isoleucine degradation
mhas00350  Tyrosine metabolism
mhas00470  D-Amino acid metabolism
mhas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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