KEGG   PATHWAY: mhat00020
Entry
mhat00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica USDA-ARS-USMARC-184
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhat00020  Citrate cycle (TCA cycle)
mhat00020

Module
mhat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhat00020]
mhat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhat00020]
mhat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhat00020]
mhat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhat00020]
mhat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhat00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica USDA-ARS-USMARC-184 [GN:mhat]
Gene
B824_13260  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
B824_13280  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B824_13270  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
B824_11630  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
B824_11620  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
B824_14730  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B824_11590  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B824_11600  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B824_2200  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
B824_2210  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
B824_2220  fumarate reductase subunit FrdC [KO:K00246]
B824_2230  fumarate reductase subunit FrdD [KO:K00247]
B824_2640  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B824_20180  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B824_10550  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B824_14750  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B824_14740  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhat00010  Glycolysis / Gluconeogenesis
mhat00053  Ascorbate and aldarate metabolism
mhat00061  Fatty acid biosynthesis
mhat00071  Fatty acid degradation
mhat00190  Oxidative phosphorylation
mhat00220  Arginine biosynthesis
mhat00250  Alanine, aspartate and glutamate metabolism
mhat00280  Valine, leucine and isoleucine degradation
mhat00350  Tyrosine metabolism
mhat00470  D-Amino acid metabolism
mhat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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