KEGG   PATHWAY: mhx00020
Entry
mhx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica M42548
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhx00020  Citrate cycle (TCA cycle)
mhx00020

Module
mhx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhx00020]
mhx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhx00020]
mhx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhx00020]
mhx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhx00020]
mhx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhx00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica M42548 [GN:mhx]
Gene
MHH_c20240  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
MHH_c20260  acnB; aconitate hydratase 2 AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MHH_c20250  icd; isocitrate dehydrogenase Icd [KO:K00031] [EC:1.1.1.42]
MHH_c18300  sucA; 2-oxoglutarate dehydrogenase E1 component SucA [KO:K00164] [EC:1.2.4.2]
MHH_c18290  sucB; dihydrolipoyltranssuccinylase SucB [KO:K00658] [EC:2.3.1.61]
MHH_c22030  lpd; lipoamide dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
MHH_c18260  sucD; succinyl-CoA synthetase - subunit alpha SucD [KO:K01902] [EC:6.2.1.5]
MHH_c18270  sucC; succinyl-CoA synthetase - subunit beta SucC [KO:K01903] [EC:6.2.1.5]
MHH_c04580  frdA; fumarate reductase flavoprotein FrdA [KO:K00244] [EC:1.3.5.1]
MHH_c04570  frdB; fumarate reductase iron-sulfur protein FrdB [KO:K00245] [EC:1.3.5.1]
MHH_c04560  frdC; fumarate reductase membrane protein FrdC [KO:K00246]
MHH_c04550  frdD; fumarate reductase membrane protein FrdD [KO:K00247]
MHH_c04430  fumC; fumarase FumC [KO:K01679] [EC:4.2.1.2]
MHH_c28760  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
MHH_c16150  pckA; phosphoenolpyruvate carboxykinase PckA [KO:K01610] [EC:4.1.1.49]
MHH_c22050  aceE; pyruvate dehydrogenase E1 component AceE [KO:K00163] [EC:1.2.4.1]
MHH_c22040  aceF; dihydrolipoyllysine-residue acetyltransferase AceF [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhx00010  Glycolysis / Gluconeogenesis
mhx00053  Ascorbate and aldarate metabolism
mhx00061  Fatty acid biosynthesis
mhx00071  Fatty acid degradation
mhx00190  Oxidative phosphorylation
mhx00220  Arginine biosynthesis
mhx00250  Alanine, aspartate and glutamate metabolism
mhx00280  Valine, leucine and isoleucine degradation
mhx00350  Tyrosine metabolism
mhx00470  D-Amino acid metabolism
mhx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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