KEGG   PATHWAY: micc00020
Entry
micc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Microbulbifer aggregans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
micc00020  Citrate cycle (TCA cycle)
micc00020

Module
micc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:micc00020]
micc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:micc00020]
micc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:micc00020]
micc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:micc00020]
Other DBs
GO: 0006099
Organism
Microbulbifer aggregans [GN:micc]
Gene
AUP74_03339  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
AUP74_00374  hacA; Homoaconitase large subunit [KO:K01681] [EC:4.2.1.3]
AUP74_02323  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AUP74_02587  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AUP74_03334  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AUP74_03333  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AUP74_03332  lpdG; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUP74_03330  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AUP74_03331  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AUP74_03336  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AUP74_03335  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AUP74_03338  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AUP74_03337  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
AUP74_01992  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
AUP74_02216  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AUP74_02622  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AUP74_00713  pckA; Phosphoenolpyruvate carboxykinase ATP [KO:K01610] [EC:4.1.1.49]
AUP74_00168  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AUP74_02845  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AUP74_02552  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
AUP74_02553  bfmBAB_2; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AUP74_00232  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AUP74_00167  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AUP74_02554  pdhC_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
micc00010  Glycolysis / Gluconeogenesis
micc00053  Ascorbate and aldarate metabolism
micc00061  Fatty acid biosynthesis
micc00062  Fatty acid elongation
micc00071  Fatty acid degradation
micc00190  Oxidative phosphorylation
micc00220  Arginine biosynthesis
micc00250  Alanine, aspartate and glutamate metabolism
micc00280  Valine, leucine and isoleucine degradation
micc00350  Tyrosine metabolism
micc00470  D-Amino acid metabolism
micc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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