KEGG   PATHWAY: mint00020
Entry
mint00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mixta intestinalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mint00020  Citrate cycle (TCA cycle)
mint00020

Module
mint_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mint00020]
mint_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mint00020]
mint_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mint00020]
mint_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mint00020]
mint_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mint00020]
Other DBs
GO: 0006099
Organism
Mixta intestinalis [GN:mint]
Gene
C7M51_00564  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
C7M51_01420  acnA; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
C7M51_04148  acnB_2; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7M51_00073  acnB_1; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7M51_00951  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
C7M51_00569  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C7M51_00570  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
C7M51_00052  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7M51_00572  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
C7M51_00571  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
C7M51_00567  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7M51_00568  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7M51_00565  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
C7M51_00566  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
C7M51_02906  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C7M51_02907  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C7M51_02908  frdC; Fumarate reductase subunit C [KO:K00246]
C7M51_02909  frdD; Fumarate reductase subunit D [KO:K00247]
C7M51_01222  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
C7M51_03993  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7M51_01031  mqo_1; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C7M51_03695  mqo_2; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C7M51_03847  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C7M51_00050  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
C7M51_00051  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
C7M51_00274  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mint00010  Glycolysis / Gluconeogenesis
mint00053  Ascorbate and aldarate metabolism
mint00061  Fatty acid biosynthesis
mint00071  Fatty acid degradation
mint00190  Oxidative phosphorylation
mint00220  Arginine biosynthesis
mint00250  Alanine, aspartate and glutamate metabolism
mint00280  Valine, leucine and isoleucine degradation
mint00350  Tyrosine metabolism
mint00470  D-Amino acid metabolism
mint00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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