KEGG   PATHWAY: mld00020
Entry
mld00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Microvirga lotononidis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mld00020  Citrate cycle (TCA cycle)
mld00020

Module
mld_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mld00020]
mld_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mld00020]
mld_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mld00020]
mld_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mld00020]
mld_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mld00020]
Other DBs
GO: 0006099
Organism
Microvirga lotononidis [GN:mld]
Gene
U0023_20520  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
U0023_15055  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
U0023_15060  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
U0023_21965  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
U0023_08020  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
U0023_12915  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
U0023_17325  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
U0023_09720  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
U0023_09725  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
U0023_20385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
U0023_09730  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
U0023_11660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
U0023_09715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
U0023_09710  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
U0023_09670  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
U0023_09675  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
U0023_09660  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
U0023_09665  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
U0023_01900  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
U0023_09705  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
U0023_07410  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
U0023_09085  transketolase [KO:K00163] [EC:1.2.4.1]
U0023_20405  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
U0023_20400  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
U0023_20390  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mld00010  Glycolysis / Gluconeogenesis
mld00053  Ascorbate and aldarate metabolism
mld00061  Fatty acid biosynthesis
mld00071  Fatty acid degradation
mld00190  Oxidative phosphorylation
mld00220  Arginine biosynthesis
mld00250  Alanine, aspartate and glutamate metabolism
mld00280  Valine, leucine and isoleucine degradation
mld00350  Tyrosine metabolism
mld00470  D-Amino acid metabolism
mld00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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