KEGG   PATHWAY: mlir00630
Entry
mlir00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Massilia litorea
Class
Metabolism; Carbohydrate metabolism
Pathway map
mlir00630  Glyoxylate and dicarboxylate metabolism
mlir00630

Module
mlir_M00012  Glyoxylate cycle [PATH:mlir00630]
mlir_M00621  Glycine cleavage system [PATH:mlir00630]
Other DBs
GO: 0046487 0043648
Organism
Massilia litorea [GN:mlir]
Gene
LPB04_14000  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LPB04_18910  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LPB04_14890  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LPB04_23205  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LPB04_18950  malate synthase A [KO:K01638] [EC:2.3.3.9]
LPB04_12525  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPB04_12560  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LPB04_12510  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LPB04_17580  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LPB04_05445  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPB04_16685  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPB04_06380  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPB04_18000  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPB04_06385  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LPB04_01535  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LPB04_23175  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LPB04_01530  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
LPB04_23180  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
LPB04_01525  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LPB04_23185  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LPB04_05010  catalase [KO:K03781] [EC:1.11.1.6]
LPB04_01405  catalase [KO:K03781] [EC:1.11.1.6]
LPB04_20120  catalase [KO:K03781] [EC:1.11.1.6]
LPB04_05610  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPB04_23625  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPB04_18810  hypothetical protein [KO:K00018] [EC:1.1.1.29]
LPB04_20135  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
LPB04_04825  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
LPB04_10845  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
LPB04_02610  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
LPB04_16965  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LPB04_07960  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB04_07990  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LPB04_21655  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LPB04_15625  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LPB04_15635  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LPB04_05110  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB04_10325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB04_17295  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB04_12650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPB04_15630  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LPB04_21245  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LPB04_04430  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
LPB04_18790  glycerate kinase [KO:K00865] [EC:2.7.1.165]
LPB04_14570  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LPB04_14560  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPB04_01790  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPB04_11430  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LPB04_14845  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LPB04_09745  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LPB04_09740  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
LPB04_14850  4Fe-4S dicluster domain-containing protein [KO:K00124]
LPB04_14860  formate dehydrogenase subunit gamma [KO:K00127]
LPB04_21110  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LPB04_08410  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mlir00010  Glycolysis / Gluconeogenesis
mlir00020  Citrate cycle (TCA cycle)
mlir00030  Pentose phosphate pathway
mlir00053  Ascorbate and aldarate metabolism
mlir00071  Fatty acid degradation
mlir00230  Purine metabolism
mlir00250  Alanine, aspartate and glutamate metabolism
mlir00260  Glycine, serine and threonine metabolism
mlir00620  Pyruvate metabolism
mlir00710  Carbon fixation by Calvin cycle
mlir00750  Vitamin B6 metabolism
mlir00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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