KEGG   PATHWAY: mln00020
Entry
mln00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mesorhizobium loti NZP2037
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mln00020  Citrate cycle (TCA cycle)
mln00020

Module
mln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mln00020]
mln_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mln00020]
mln_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mln00020]
mln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mln00020]
mln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mln00020]
Other DBs
GO: 0006099
Organism
Mesorhizobium loti NZP2037 [GN:mln]
Gene
A9174_06620  citrate synthase [KO:K01647] [EC:2.3.3.1]
A9174_06625  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
A9174_22475  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9174_04930  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A9174_24640  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9174_05050  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9174_05055  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9174_04455  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9174_23255  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9174_05070  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9174_05045  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9174_05030  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9174_05170  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9174_05180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9174_05160  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A9174_05165  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9174_31735  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A9174_26415  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A9174_05025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9174_06155  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A9174_01975  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9174_34620  transketolase [KO:K00163] [EC:1.2.4.1]
A9174_23280  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A9174_23275  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A9174_07460  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
A9174_23270  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mln00010  Glycolysis / Gluconeogenesis
mln00053  Ascorbate and aldarate metabolism
mln00061  Fatty acid biosynthesis
mln00071  Fatty acid degradation
mln00190  Oxidative phosphorylation
mln00220  Arginine biosynthesis
mln00250  Alanine, aspartate and glutamate metabolism
mln00280  Valine, leucine and isoleucine degradation
mln00350  Tyrosine metabolism
mln00470  D-Amino acid metabolism
mln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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