KEGG   PATHWAY: mmes00030
Entry
mmes00030                   Pathway                                
Name
Pentose phosphate pathway - Methylobacterium mesophilicum
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmes00030  Pentose phosphate pathway
mmes00030

Module
mmes_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mmes00030]
mmes_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mmes00030]
mmes_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mmes00030]
mmes_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mmes00030]
mmes_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:mmes00030]
Other DBs
GO: 0006098
Organism
Methylobacterium mesophilicum [GN:mmes]
Gene
MMSR116_20160  bifunctional transaldolase/phosoglucose isomerase [KO:K13810] [EC:2.2.1.2 5.3.1.9]
MMSR116_05540  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMSR116_10175  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MMSR116_20150  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
MMSR116_12355  lactonase family protein [KO:K07404] [EC:3.1.1.31]
MMSR116_20155  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MMSR116_30485  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
MMSR116_02270  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
MMSR116_02285  transketolase family protein [KO:K00615] [EC:2.2.1.1]
MMSR116_02290  transketolase [KO:K00615] [EC:2.2.1.1]
MMSR116_20165  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
MMSR116_28490  transketolase family protein [KO:K00615] [EC:2.2.1.1]
MMSR116_28495  transketolase [KO:K00615] [EC:2.2.1.1]
MMSR116_06830  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
MMSR116_09170  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
MMSR116_10080  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
MMSR116_11775  ribokinase [KO:K00852] [EC:2.7.1.15]
MMSR116_21880  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
MMSR116_23125  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
MMSR116_10475  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
MMSR116_04125  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
MMSR116_12425  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
MMSR116_12430  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MMSR116_23025  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
MMSR116_06450  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_06470  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_12600  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_11665  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_27920  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_23590  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
MMSR116_25970  gluconokinase [KO:K00851] [EC:2.7.1.12]
MMSR116_01230  sugar kinase [KO:K00874] [EC:2.7.1.45]
MMSR116_07305  glycerate kinase [KO:K11529] [EC:2.7.1.165]
MMSR116_25345  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
MMSR116_07160  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
MMSR116_30470  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
MMSR116_00185  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mmes00010  Glycolysis / Gluconeogenesis
mmes00040  Pentose and glucuronate interconversions
mmes00052  Galactose metabolism
mmes00230  Purine metabolism
mmes00240  Pyrimidine metabolism
mmes00340  Histidine metabolism
mmes00630  Glyoxylate and dicarboxylate metabolism
mmes00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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