KEGG   PATHWAY: mmot00020
Entry
mmot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylomonas montana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmot00020  Citrate cycle (TCA cycle)
mmot00020

Module
mmot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmot00020]
mmot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmot00020]
mmot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmot00020]
mmot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmot00020]
Other DBs
GO: 0006099
Organism
Methylomonas montana [GN:mmot]
Gene
QZJ86_09900  citrate synthase [KO:K01647] [EC:2.3.3.1]
QZJ86_18725  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QZJ86_13015  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QZJ86_20530  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QZJ86_13020  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
QZJ86_11035  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QZJ86_11040  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QZJ86_01190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QZJ86_17280  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QZJ86_17275  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QZJ86_09920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QZJ86_09925  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QZJ86_09910  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QZJ86_09915  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QZJ86_20905  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QZJ86_11925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QZJ86_19025  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
QZJ86_19020  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
QZJ86_01200  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QZJ86_01195  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
QZJ86_14405  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmot00010  Glycolysis / Gluconeogenesis
mmot00053  Ascorbate and aldarate metabolism
mmot00061  Fatty acid biosynthesis
mmot00071  Fatty acid degradation
mmot00190  Oxidative phosphorylation
mmot00220  Arginine biosynthesis
mmot00250  Alanine, aspartate and glutamate metabolism
mmot00280  Valine, leucine and isoleucine degradation
mmot00350  Tyrosine metabolism
mmot00470  D-Amino acid metabolism
mmot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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