KEGG   PATHWAY: mmyr00020
Entry
mmyr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Maritalea myrionectae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmyr00020  Citrate cycle (TCA cycle)
mmyr00020

Module
mmyr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmyr00020]
mmyr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmyr00020]
mmyr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmyr00020]
mmyr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmyr00020]
mmyr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmyr00020]
Other DBs
GO: 0006099
Organism
Maritalea myrionectae [GN:mmyr]
Gene
MXMO3_02071  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
MXMO3_00342  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MXMO3_01568  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
MXMO3_00456  oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
MXMO3_00457  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MXMO3_02099  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MXMO3_00459  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MXMO3_00455  succinate--CoA ligase (ADP-forming) [KO:K01902] [EC:6.2.1.5]
MXMO3_00454  succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
MXMO3_00446  succinate dehydrogenase (quinone) [KO:K00239] [EC:1.3.5.1]
MXMO3_00449  succinate dehydrogenase (quinone) [KO:K00240] [EC:1.3.5.1]
MXMO3_00444  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MXMO3_00445  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MXMO3_03338  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MXMO3_00499  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MXMO3_00453  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MXMO3_00489  acetyl-CoA carboxylase [KO:K01958] [EC:6.4.1.1]
MXMO3_00012  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MXMO3_01385  pyruvate dehydrogenase (acetyl-transferring) [KO:K00163] [EC:1.2.4.1]
MXMO3_02095  pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
MXMO3_02096  dihydrolipoyllysine-residue succinyltransferase [KO:K00162] [EC:1.2.4.1]
MXMO3_02097  dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmyr00010  Glycolysis / Gluconeogenesis
mmyr00053  Ascorbate and aldarate metabolism
mmyr00061  Fatty acid biosynthesis
mmyr00071  Fatty acid degradation
mmyr00190  Oxidative phosphorylation
mmyr00220  Arginine biosynthesis
mmyr00250  Alanine, aspartate and glutamate metabolism
mmyr00280  Valine, leucine and isoleucine degradation
mmyr00350  Tyrosine metabolism
mmyr00470  D-Amino acid metabolism
mmyr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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