KEGG   PATHWAY: mns00020
Entry
mns00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Moraxella nasovis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mns00020  Citrate cycle (TCA cycle)
mns00020

Module
mns_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mns00020]
mns_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mns00020]
mns_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mns00020]
mns_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mns00020]
mns_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mns00020]
Other DBs
GO: 0006099
Organism
Moraxella nasovis [GN:mns]
Gene
LU293_04555  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LU293_02590  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LU293_02860  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LU293_04525  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LU293_04520  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LU293_04510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LU293_09200  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
LU293_04540  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LU293_04535  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LU293_04550  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LU293_04545  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LU293_06075  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LU293_02105  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LU293_08705  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LU293_00835  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LU293_00830  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mns00010  Glycolysis / Gluconeogenesis
mns00061  Fatty acid biosynthesis
mns00071  Fatty acid degradation
mns00190  Oxidative phosphorylation
mns00220  Arginine biosynthesis
mns00250  Alanine, aspartate and glutamate metabolism
mns00280  Valine, leucine and isoleucine degradation
mns00350  Tyrosine metabolism
mns00470  D-Amino acid metabolism
mns00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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