KEGG   PATHWAY: mor00020
Entry
mor00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methylobacterium oryzae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mor00020  Citrate cycle (TCA cycle)
mor00020

Module
mor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mor00020]
mor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mor00020]
mor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mor00020]
mor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mor00020]
mor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mor00020]
Other DBs
GO: 0006099
Organism
Methylobacterium oryzae [GN:mor]
Gene
MOC_2415  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
MOC_0591  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MOC_4102  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MOC_6269  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MOC_1136  sucA; Alpha-ketoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MOC_1138  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MOC_6193  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MOC_1210  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MOC_1140  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MOC_4250  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
MOC_1135  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
MOC_1134  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
MOC_0615  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MOC_0616  Succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MOC_0613  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MOC_0614  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MOC_5179  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MOC_5564  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MOC_1133  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MOC_5561  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
MOC_0336  mqo; Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
MOC_3527  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MOC_6195  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MOC_1205  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
MOC_1206  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
MOC_6194  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase comple [KO:K00627] [EC:2.3.1.12]
MOC_1209  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mor00010  Glycolysis / Gluconeogenesis
mor00053  Ascorbate and aldarate metabolism
mor00061  Fatty acid biosynthesis
mor00071  Fatty acid degradation
mor00190  Oxidative phosphorylation
mor00220  Arginine biosynthesis
mor00250  Alanine, aspartate and glutamate metabolism
mor00280  Valine, leucine and isoleucine degradation
mor00350  Tyrosine metabolism
mor00470  D-Amino acid metabolism
mor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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