KEGG   PATHWAY: mpt00020
Entry
mpt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methylibium petroleiphilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpt00020  Citrate cycle (TCA cycle)
mpt00020

Module
mpt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpt00020]
mpt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpt00020]
mpt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpt00020]
mpt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpt00020]
mpt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpt00020]
Other DBs
GO: 0006099
Organism
Methylibium petroleiphilum [GN:mpt]
Gene
Mpe_A2165  citrate synthase [KO:K01647] [EC:2.3.3.1]
Mpe_A1358  aconitase [KO:K01681] [EC:4.2.1.3]
Mpe_A1363  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Mpe_A2468  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Mpe_A2013  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Mpe_A2012  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Mpe_A2010  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mpe_A2524  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mpe_A2126  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mpe_A0071  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Mpe_A0072  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Mpe_A2168  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Mpe_A2167  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Mpe_A2170  succinate dehydrogenase subunit C [KO:K00241]
Mpe_A2169  succinate dehydrogenase subunit D [KO:K00242]
Mpe_A1382  fumarase [KO:K01676] [EC:4.2.1.2]
Mpe_A3332  fumarase [KO:K01679] [EC:4.2.1.2]
Mpe_A2172  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Mpe_B0497  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Mpe_A3705  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Mpe_A2128  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Mpe_A0874  Pyruvate dehydrogenase (lipoamide) [KO:K00163] [EC:1.2.4.1]
Mpe_A1600  acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Mpe_A2127  Dihydrolipoamide S-succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpt00010  Glycolysis / Gluconeogenesis
mpt00053  Ascorbate and aldarate metabolism
mpt00061  Fatty acid biosynthesis
mpt00071  Fatty acid degradation
mpt00190  Oxidative phosphorylation
mpt00220  Arginine biosynthesis
mpt00250  Alanine, aspartate and glutamate metabolism
mpt00280  Valine, leucine and isoleucine degradation
mpt00350  Tyrosine metabolism
mpt00470  D-Amino acid metabolism
mpt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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