KEGG   PATHWAY: mri00020
Entry
mri00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Maioricimonas rarisocia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mri00020  Citrate cycle (TCA cycle)
mri00020

Module
mri_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mri00020]
mri_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mri00020]
mri_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mri00020]
mri_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mri00020]
mri_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mri00020]
Other DBs
GO: 0006099
Organism
Maioricimonas rarisocia [GN:mri]
Gene
Mal4_25960  pcsA; Citrate synthase, plasmid [KO:K01647] [EC:2.3.3.1]
Mal4_15300  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
Mal4_11760  hicd; Homoisocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
Mal4_26830  icd; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
Mal4_26900  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Mal4_26910  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Mal4_26920  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
Mal4_41210  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mal4_37040  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mal4_37050  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mal4_08660  sucD_1; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Mal4_08670  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Mal4_42560  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Mal4_42550  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Mal4_42570  hypothetical protein [KO:K00241]
Mal4_09530  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Mal4_25770  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mal4_02890  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
Mal4_14370  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
Mal4_29720  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Mal4_36650  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Mal4_31770  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Mal4_54100  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mri00010  Glycolysis / Gluconeogenesis
mri00053  Ascorbate and aldarate metabolism
mri00061  Fatty acid biosynthesis
mri00071  Fatty acid degradation
mri00190  Oxidative phosphorylation
mri00220  Arginine biosynthesis
mri00250  Alanine, aspartate and glutamate metabolism
mri00280  Valine, leucine and isoleucine degradation
mri00350  Tyrosine metabolism
mri00470  D-Amino acid metabolism
mri00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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