KEGG   PATHWAY: myco00020
Entry
myco00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycoavidus sp. B2-EB
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
myco00020  Citrate cycle (TCA cycle)
myco00020

Module
myco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:myco00020]
myco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:myco00020]
myco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:myco00020]
myco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:myco00020]
Other DBs
GO: 0006099
Organism
Mycoavidus sp. B2-EB [GN:myco]
Gene
MPB2EB_1263  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MPB2EB_1273  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MPB2EB_1523  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MPB2EB_0868  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
MPB2EB_0869  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MPB2EB_0754  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPB2EB_0870  odhL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPB2EB_1363  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MPB2EB_1364  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MPB2EB_1266  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPB2EB_1265  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPB2EB_1268  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
MPB2EB_1267  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MPB2EB_0023  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MPB2EB_1271  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MPB2EB_0752  pdhA; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MPB2EB_0753  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
myco00010  Glycolysis / Gluconeogenesis
myco00061  Fatty acid biosynthesis
myco00071  Fatty acid degradation
myco00190  Oxidative phosphorylation
myco00220  Arginine biosynthesis
myco00250  Alanine, aspartate and glutamate metabolism
myco00280  Valine, leucine and isoleucine degradation
myco00350  Tyrosine metabolism
myco00470  D-Amino acid metabolism
myco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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