KEGG   PATHWAY: nani00020
Entry
nani00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria animaloris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nani00020  Citrate cycle (TCA cycle)
nani00020

Module
nani_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nani00020]
nani_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nani00020]
nani_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nani00020]
nani_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nani00020]
Other DBs
GO: 0006099
Organism
Neisseria animaloris [GN:nani]
Gene
NCTC12227_01063  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC12227_00144  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC12227_00757  icd; 3-isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC12227_01062  sucA; 2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
NCTC12227_01061  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NCTC12227_00201  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12227_01059  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12227_01091  lpdA; dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes) [KO:K00382] [EC:1.8.1.4]
NCTC12227_01055  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC12227_01056  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC12227_01066  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC12227_01065  sdhB_2; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC12227_01068  sdhC; putative succinate dehydrogenase cytochrome B subunit [KO:K00241]
NCTC12227_01067  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
NCTC12227_00799  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NCTC12227_00798  sdhB_1; succinate dehydrogenase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NCTC12227_00797  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
NCTC12227_00796  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
NCTC12227_01733  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NCTC12227_01070  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12227_01093  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
NCTC12227_01092  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nani00010  Glycolysis / Gluconeogenesis
nani00053  Ascorbate and aldarate metabolism
nani00061  Fatty acid biosynthesis
nani00071  Fatty acid degradation
nani00190  Oxidative phosphorylation
nani00220  Arginine biosynthesis
nani00250  Alanine, aspartate and glutamate metabolism
nani00280  Valine, leucine and isoleucine degradation
nani00350  Tyrosine metabolism
nani00470  D-Amino acid metabolism
nani00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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