KEGG   PATHWAY: naw00020
Entry
naw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria arctica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
naw00020  Citrate cycle (TCA cycle)
naw00020

Module
naw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:naw00020]
naw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:naw00020]
naw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:naw00020]
naw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:naw00020]
Other DBs
GO: 0006099
Organism
Neisseria arctica [GN:naw]
Gene
LVJ86_04075  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LVJ86_01620  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LVJ86_06585  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LVJ86_04080  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LVJ86_04085  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LVJ86_02675  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVJ86_04095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVJ86_05120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVJ86_02420  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
LVJ86_04060  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LVJ86_04065  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LVJ86_04050  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LVJ86_04055  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LVJ86_09600  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LVJ86_04865  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LVJ86_05110  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LVJ86_05115  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
naw00010  Glycolysis / Gluconeogenesis
naw00061  Fatty acid biosynthesis
naw00071  Fatty acid degradation
naw00190  Oxidative phosphorylation
naw00220  Arginine biosynthesis
naw00250  Alanine, aspartate and glutamate metabolism
naw00280  Valine, leucine and isoleucine degradation
naw00350  Tyrosine metabolism
naw00470  D-Amino acid metabolism
naw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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