KEGG   PATHWAY: nax00020
Entry
nax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aquisalimonas sp. 2447
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nax00020  Citrate cycle (TCA cycle)
nax00020

Module
nax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nax00020]
nax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nax00020]
nax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nax00020]
nax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nax00020]
Other DBs
GO: 0006099
Organism
Aquisalimonas sp. 2447 [GN:nax]
Gene
HC341_01065  citrate synthase [KO:K01647] [EC:2.3.3.1]
HC341_04045  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HC341_09530  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HC341_17360  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HC341_06525  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HC341_00445  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HC341_00450  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HC341_00270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HC341_00455  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HC341_07500  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HC341_15655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HC341_15660  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HC341_09685  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HC341_09690  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HC341_09675  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HC341_09680  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HC341_13115  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HC341_09810  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HC341_14935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HC341_07045  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HC341_05335  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HC341_00280  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HC341_00275  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nax00010  Glycolysis / Gluconeogenesis
nax00053  Ascorbate and aldarate metabolism
nax00061  Fatty acid biosynthesis
nax00071  Fatty acid degradation
nax00190  Oxidative phosphorylation
nax00220  Arginine biosynthesis
nax00250  Alanine, aspartate and glutamate metabolism
nax00280  Valine, leucine and isoleucine degradation
nax00350  Tyrosine metabolism
nax00470  D-Amino acid metabolism
nax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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