KEGG   PATHWAY: nbl00020
Entry
nbl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria brasiliensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nbl00020  Citrate cycle (TCA cycle)
nbl00020

Module
nbl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nbl00020]
nbl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nbl00020]
nbl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nbl00020]
nbl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nbl00020]
Other DBs
GO: 0006099
Organism
Neisseria brasiliensis [GN:nbl]
Gene
GJV52_09340  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GJV52_01205  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GJV52_10740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GJV52_09345  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GJV52_09350  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GJV52_09360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GJV52_11200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GJV52_11570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GJV52_12460  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
GJV52_09325  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GJV52_09330  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GJV52_09315  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GJV52_09320  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GJV52_01155  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GJV52_00610  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GJV52_00980  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GJV52_04860  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GJV52_11190  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GJV52_11195  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nbl00010  Glycolysis / Gluconeogenesis
nbl00061  Fatty acid biosynthesis
nbl00071  Fatty acid degradation
nbl00190  Oxidative phosphorylation
nbl00220  Arginine biosynthesis
nbl00250  Alanine, aspartate and glutamate metabolism
nbl00280  Valine, leucine and isoleucine degradation
nbl00350  Tyrosine metabolism
nbl00470  D-Amino acid metabolism
nbl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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