KEGG   PATHWAY: ncg00630
Entry
ncg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardiopsis changdeensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
ncg00630  Glyoxylate and dicarboxylate metabolism
ncg00630

Module
ncg_M00012  Glyoxylate cycle [PATH:ncg00630]
ncg_M00621  Glycine cleavage system [PATH:ncg00630]
ncg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ncg00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardiopsis changdeensis [GN:ncg]
Gene
KGD84_21405  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
KGD84_16290  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
KGD84_25295  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
KGD84_00490  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KGD84_23950  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
KGD84_23540  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KGD84_29245  citrate synthase [KO:K01647] [EC:2.3.3.1]
KGD84_18700  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KGD84_11060  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KGD84_25695  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KGD84_27345  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KGD84_03875  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
KGD84_25020  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
KGD84_25705  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
KGD84_04825  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
KGD84_04835  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
KGD84_04830  acyl-CoA carboxylase subunit epsilon [KO:K27095]
KGD84_02325  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
KGD84_02330  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
KGD84_15005  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KGD84_23955  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
KGD84_23960  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
KGD84_23965  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
KGD84_13670  catalase [KO:K03781] [EC:1.11.1.6]
KGD84_17040  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
KGD84_09215  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
KGD84_09285  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KGD84_12320  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
KGD84_25320  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KGD84_21085  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
KGD84_25310  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KGD84_01135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KGD84_09345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KGD84_25315  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KGD84_23750  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
KGD84_23760  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
KGD84_23755  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
KGD84_29560  glycerate kinase [KO:K00865] [EC:2.7.1.165]
KGD84_09400  glycerate kinase [KO:K00865] [EC:2.7.1.165]
KGD84_19910  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KGD84_30990  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KGD84_06125  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KGD84_25380  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ncg00010  Glycolysis / Gluconeogenesis
ncg00020  Citrate cycle (TCA cycle)
ncg00030  Pentose phosphate pathway
ncg00053  Ascorbate and aldarate metabolism
ncg00071  Fatty acid degradation
ncg00230  Purine metabolism
ncg00250  Alanine, aspartate and glutamate metabolism
ncg00260  Glycine, serine and threonine metabolism
ncg00620  Pyruvate metabolism
ncg00750  Vitamin B6 metabolism
ncg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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