KEGG   PATHWAY: ncq00020
Entry
ncq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nocardioides coralli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ncq00020  Citrate cycle (TCA cycle)
ncq00020

Module
ncq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ncq00020]
ncq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ncq00020]
ncq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ncq00020]
ncq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ncq00020]
ncq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ncq00020]
Other DBs
GO: 0006099
Organism
Nocardioides coralli [GN:ncq]
Gene
K6T13_02415  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
K6T13_14055  citrate synthase [KO:K01647] [EC:2.3.3.1]
K6T13_08145  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K6T13_04175  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K6T13_05710  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
K6T13_04465  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6T13_06930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6T13_01990  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6T13_01985  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6T13_04120  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K6T13_04115  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K6T13_04245  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6T13_04295  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6T13_04240  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6T13_04300  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K6T13_04250  succinate dehydrogenase cytochrome b subunit [KO:K00241]
K6T13_13795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K6T13_13810  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K6T13_04165  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6T13_04545  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K6T13_00745  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
K6T13_00835  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
K6T13_06610  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K6T13_06925  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ncq00010  Glycolysis / Gluconeogenesis
ncq00053  Ascorbate and aldarate metabolism
ncq00061  Fatty acid biosynthesis
ncq00071  Fatty acid degradation
ncq00190  Oxidative phosphorylation
ncq00220  Arginine biosynthesis
ncq00250  Alanine, aspartate and glutamate metabolism
ncq00280  Valine, leucine and isoleucine degradation
ncq00350  Tyrosine metabolism
ncq00470  D-Amino acid metabolism
ncq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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