KEGG   PATHWAY: ncq00630
Entry
ncq00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardioides coralli
Class
Metabolism; Carbohydrate metabolism
Pathway map
ncq00630  Glyoxylate and dicarboxylate metabolism
ncq00630

Module
ncq_M00621  Glycine cleavage system [PATH:ncq00630]
ncq_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ncq00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardioides coralli [GN:ncq]
Gene
K6T13_01240  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
K6T13_04015  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
K6T13_04165  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6T13_02415  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
K6T13_14055  citrate synthase [KO:K01647] [EC:2.3.3.1]
K6T13_08145  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K6T13_02635  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6T13_05965  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6T13_08300  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6T13_12585  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6T13_16640  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6T13_05960  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
K6T13_05870  protein meaA [KO:K14447] [EC:5.4.99.63]
K6T13_15930  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
K6T13_00490  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
K6T13_04580  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
K6T13_04655  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
K6T13_04650  acyl-CoA carboxylase subunit epsilon [KO:K27095]
K6T13_06575  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
K6T13_04325  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
K6T13_04330  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
K6T13_11765  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
K6T13_11755  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K6T13_06785  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K6T13_06860  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
K6T13_12600  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K6T13_07240  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K6T13_09280  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
K6T13_06955  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
K6T13_12815  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
K6T13_04465  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6T13_06930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6T13_09305  gcvH; glycine cleavage system protein GcvH [KO:K02437]
K6T13_07325  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
K6T13_02805  glycerate kinase [KO:K00865] [EC:2.7.1.165]
K6T13_11130  glycerate kinase [KO:K00865] [EC:2.7.1.165]
K6T13_05710  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ncq00010  Glycolysis / Gluconeogenesis
ncq00020  Citrate cycle (TCA cycle)
ncq00030  Pentose phosphate pathway
ncq00053  Ascorbate and aldarate metabolism
ncq00071  Fatty acid degradation
ncq00230  Purine metabolism
ncq00250  Alanine, aspartate and glutamate metabolism
ncq00260  Glycine, serine and threonine metabolism
ncq00620  Pyruvate metabolism
ncq00750  Vitamin B6 metabolism
ncq00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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