KEGG   PATHWAY: nek00020
Entry
nek00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria sp. KEM232
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nek00020  Citrate cycle (TCA cycle)
nek00020

Module
nek_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nek00020]
nek_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nek00020]
nek_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nek00020]
nek_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nek00020]
Other DBs
GO: 0006099
Organism
Neisseria sp. KEM232 [GN:nek]
Gene
CGZ77_06500  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CGZ77_03835  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CGZ77_03380  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CGZ77_06495  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CGZ77_06490  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CGZ77_11690  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGZ77_06485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGZ77_10060  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGZ77_07250  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CGZ77_06515  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CGZ77_06510  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CGZ77_06525  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CGZ77_06520  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CGZ77_00330  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CGZ77_00585  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CGZ77_06530  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGZ77_11700  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CGZ77_11695  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nek00010  Glycolysis / Gluconeogenesis
nek00061  Fatty acid biosynthesis
nek00071  Fatty acid degradation
nek00190  Oxidative phosphorylation
nek00220  Arginine biosynthesis
nek00250  Alanine, aspartate and glutamate metabolism
nek00280  Valine, leucine and isoleucine degradation
nek00350  Tyrosine metabolism
nek00470  D-Amino acid metabolism
nek00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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