KEGG   PATHWAY: nfb03008
Entry
nfb03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Neodiprion fabricii
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
nfb03008  Ribosome biogenesis in eukaryotes
nfb03008

Organism
Neodiprion fabricii [GN:nfb]
Gene
124177418  casein kinase II subunit beta isoform X1 [KO:K03115]
124182464  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
124184754  nucleolar protein 6 isoform X1 [KO:K14544]
124178198  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
124185926  WD repeat-containing protein 43 [KO:K14546]
124186253  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
124178590  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
124182473  HEAT repeat-containing protein 1 homolog [KO:K14550]
124183145  WD repeat-containing protein 75 [KO:K14552]
124176409  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
124187962  WD repeat-containing protein 36 [KO:K14554]
124183781  transducin beta-like protein 3 [KO:K14555]
124175896  WD repeat-containing protein 3 [KO:K14556]
124184664  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
124184628  periodic tryptophan protein 2 homolog [KO:K14558]
124177593  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
124178193  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
124180486  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
124186077  rRNA 2'-O-methyltransferase fibrillarin isoform X1 [KO:K14563] [EC:2.1.1.-]
124179241  nucleolar protein 56 [KO:K14564]
124176908  nucleolar protein 58 [KO:K14565]
124176680  NHP2-like protein 1 homolog [KO:K12845]
124183365  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
124177720  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
124188197  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
124186152  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
124179202  rRNA-processing protein FCF1 homolog [KO:K14566]
124179551  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
124180117  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
124176598  ribosome biogenesis protein BMS1 homolog [KO:K14569]
124184455  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
124188150  RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
124181904  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
124178522  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
124183551  ribonuclease P protein subunit p25-like protein isoform X1 [KO:K14525] [EC:3.1.26.5]
124181243  ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
124175167  ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
124176562  ribonuclease P protein subunit p40-like [KO:K14530] [EC:3.1.26.5]
124183229  RNA exonuclease 1 isoform X1 [KO:K14570] [EC:3.1.-.-]
124182765  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
124181679  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
124182689  5'-3' exoribonuclease 2 homolog isoform X1 [KO:K12619] [EC:3.1.13.-]
124180974  nucleolar GTP-binding protein 1 [KO:K06943]
124184319  nucleolar GTP-binding protein 2 [KO:K14537]
124181603  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
124176749  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
124180517  midasin [KO:K14572]
124185112  RNA-binding protein 28 [KO:K14573]
124175236  RNA-binding protein NOB1 [KO:K11883]
124174910  GTP-binding nuclear protein Ran [KO:K07936]
124178197  exportin-1 [KO:K14290]
124180016  60S ribosomal export protein NMD3 isoform X1 [KO:K07562]
124182304  nuclear RNA export factor 1-like [KO:K14284]
124184722  nuclear RNA export factor 1-like [KO:K14284]
124179641  nuclear RNA export factor 1-like [KO:K14284]
124179642  nuclear RNA export factor 1-like [KO:K14284]
124174626  NTF2-related export protein [KO:K14285]
124182136  eukaryotic translation initiation factor 6 [KO:K03264]
124182935  ribosome maturation protein SBDS [KO:K14574]
124180393  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
124180260  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
124177311  ATPase family protein 2 homolog [KO:K14575]
124186649  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
124175550  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
124177558  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
124187437  small subunit ribosomal RNA [KO:K01979]
124187585  small subunit ribosomal RNA [KO:K01979]
124187287  small subunit ribosomal RNA [KO:K01979]
124187547  small subunit ribosomal RNA [KO:K01979]
124181772  small subunit ribosomal RNA [KO:K01979]
124181810  large subunit ribosomal RNA [KO:K01982]
124187591  large subunit ribosomal RNA [KO:K01982]
124187693  large subunit ribosomal RNA [KO:K01982]
124187382  large subunit ribosomal RNA [KO:K01982]
124174517  small nucleolar RNA U3 [KO:K14483]
124174516  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
nfb03010  Ribosome
KO pathway
ko03008   
LinkDB

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