KEGG   PATHWAY: nid00020
Entry
nid00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrosopumilus piranensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nid00020  Citrate cycle (TCA cycle)
nid00020

Module
nid_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nid00020]
nid_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nid00020]
Other DBs
GO: 0006099
Organism
Nitrosopumilus piranensis [GN:nid]
Gene
NPIRD3C_1009  gltA; Citrate synthase [KO:K01659] [EC:2.3.3.5]
NPIRD3C_2127  aco; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NPIRD3C_2039  icd; putative isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
NPIRD3C_1949  2:oxoacid-ferredoxin oxidoreductase, fused alpha and gamma subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NPIRD3C_1948  2:oxoacid-ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NPIRD3C_0964  sucD; succinyl-CoA ligase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
NPIRD3C_0965  sucC; succinyl-CoA ligase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
NPIRD3C_0648  sdhA; succinate dehydrogenase flavoprotein subunit/fumarate reductase [KO:K00239] [EC:1.3.5.1]
NPIRD3C_0651  sdhB; FeS-center protein of succinate dehydrogenase/fumarate reductase [KO:K00240] [EC:1.3.5.1]
NPIRD3C_0649  sdhC; putative succinate dehydrogenase/fumarate reductase [KO:K00241]
NPIRD3C_0650  sdhD; putative succinate dehydrogenase/fumarate reductase [KO:K00242]
NPIRD3C_0742  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NPIRD3C_1593  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NPIRD3C_1975  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nid00010  Glycolysis / Gluconeogenesis
nid00061  Fatty acid biosynthesis
nid00071  Fatty acid degradation
nid00190  Oxidative phosphorylation
nid00220  Arginine biosynthesis
nid00250  Alanine, aspartate and glutamate metabolism
nid00280  Valine, leucine and isoleucine degradation
nid00350  Tyrosine metabolism
nid00470  D-Amino acid metabolism
nid00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system