KEGG   PATHWAY: nik00630
Entry
nik00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nitrincola iocasae
Class
Metabolism; Carbohydrate metabolism
Pathway map
nik00630  Glyoxylate and dicarboxylate metabolism
nik00630

Module
nik_M00012  Glyoxylate cycle [PATH:nik00630]
nik_M00621  Glycine cleavage system [PATH:nik00630]
Other DBs
GO: 0046487 0043648
Organism
Nitrincola iocasae [GN:nik]
Gene
F5I99_09745  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
F5I99_02480  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
F5I99_07870  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F5I99_16555  malate synthase G [KO:K01638] [EC:2.3.3.9]
F5I99_14370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F5I99_06640  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F5I99_09185  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F5I99_10895  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F5I99_02860  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F5I99_07205  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
F5I99_07900  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F5I99_15475  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
F5I99_13560  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
F5I99_05480  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
F5I99_04150  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
F5I99_04145  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
F5I99_04140  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
F5I99_14000  catalase [KO:K03781] [EC:1.11.1.6]
F5I99_11445  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F5I99_12030  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
F5I99_08660  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
F5I99_09410  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
F5I99_09385  ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
F5I99_08180  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F5I99_14250  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F5I99_00540  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F5I99_00550  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F5I99_02390  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F5I99_12220  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
F5I99_01545  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
F5I99_12970  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
F5I99_18935  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
F5I99_18955  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
F5I99_01050  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
F5I99_06675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F5I99_07805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F5I99_01055  gcvH; glycine cleavage system protein GcvH [KO:K02437]
F5I99_14755  hypothetical protein [KO:K15918] [EC:2.7.1.31]
F5I99_03345  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
F5I99_12250  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F5I99_06025  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
F5I99_12255  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
F5I99_06030  4Fe-4S dicluster domain-containing protein [KO:K00124]
F5I99_06035  formate dehydrogenase subunit gamma [KO:K00127]
F5I99_14275  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
F5I99_18980  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
F5I99_04580  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
F5I99_12195  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nik00010  Glycolysis / Gluconeogenesis
nik00020  Citrate cycle (TCA cycle)
nik00030  Pentose phosphate pathway
nik00053  Ascorbate and aldarate metabolism
nik00071  Fatty acid degradation
nik00230  Purine metabolism
nik00250  Alanine, aspartate and glutamate metabolism
nik00260  Glycine, serine and threonine metabolism
nik00620  Pyruvate metabolism
nik00710  Carbon fixation by Calvin cycle
nik00750  Vitamin B6 metabolism
nik00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system