KEGG   PATHWAY: noc00020
Entry
noc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrosococcus oceani
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
noc00020  Citrate cycle (TCA cycle)
noc00020

Module
noc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:noc00020]
noc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:noc00020]
noc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:noc00020]
noc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:noc00020]
Other DBs
GO: 0006099
Organism
Nitrosococcus oceani [GN:noc]
Gene
Noc_2628  citrate synthase [KO:K01647] [EC:2.3.3.1]
Noc_1267  hypothetical protein [KO:K01647] [EC:2.3.3.1]
Noc_1788  aconitase [KO:K01681] [EC:4.2.1.3]
Noc_2707  aconitase [KO:K01681] [EC:4.2.1.3]
Noc_2103  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Noc_1378  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Noc_0111  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Noc_0112  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Noc_0113  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Noc_1256  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Noc_2109  Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component-like enzyme [KO:K00382] [EC:1.8.1.4]
Noc_0714  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Noc_0713  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Noc_2471  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Noc_2470  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Noc_2473  succinate dehydrogenase subunit C [KO:K00241]
Noc_2472  succinate dehydrogenase subunit D [KO:K00242]
Noc_1627  fumarase [KO:K01679] [EC:4.2.1.2]
Noc_2802  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Noc_1254  2-oxo-acid dehydrogenase E1 component homodimeric type [KO:K00163] [EC:1.2.4.1]
Noc_2111  Dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
Noc_2110  Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component [KO:K00162] [EC:1.2.4.1]
Noc_1255  Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component-like enzyme [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
noc00010  Glycolysis / Gluconeogenesis
noc00053  Ascorbate and aldarate metabolism
noc00061  Fatty acid biosynthesis
noc00071  Fatty acid degradation
noc00190  Oxidative phosphorylation
noc00220  Arginine biosynthesis
noc00250  Alanine, aspartate and glutamate metabolism
noc00280  Valine, leucine and isoleucine degradation
noc00350  Tyrosine metabolism
noc00470  D-Amino acid metabolism
noc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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