KEGG   PATHWAY: noo00630
Entry
noo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardioides sp. S-1144
Class
Metabolism; Carbohydrate metabolism
Pathway map
noo00630  Glyoxylate and dicarboxylate metabolism
noo00630

Module
noo_M00621  Glycine cleavage system [PATH:noo00630]
noo_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:noo00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardioides sp. S-1144 [GN:noo]
Gene
FE634_01945  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FE634_06650  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FE634_06235  citrate synthase [KO:K01647] [EC:2.3.3.1]
FE634_16785  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
FE634_11255  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FE634_01030  crotonase/enoyl-CoA hydratase family protein [KO:K00626] [EC:2.3.1.9]
FE634_05140  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FE634_20460  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FE634_09295  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FE634_11175  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FE634_09290  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
FE634_09195  protein meaA [KO:K14447] [EC:5.4.99.63]
FE634_19600  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
FE634_07085  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
FE634_00330  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
FE634_07125  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
FE634_07120  acyl-CoA carboxylase subunit epsilon [KO:K27095]
FE634_08380  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
FE634_06760  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FE634_06765  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FE634_01645  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FE634_10165  catalase [KO:K03781] [EC:1.11.1.6]
FE634_17375  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FE634_10140  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FE634_13065  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FE634_13270  glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
FE634_13295  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FE634_12730  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FE634_10765  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FE634_12975  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FE634_06940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FE634_12990  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FE634_10795  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FE634_18550  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
FE634_07075  glycerate kinase [KO:K00865] [EC:2.7.1.165]
FE634_14025  glycerate kinase [KO:K00865] [EC:2.7.1.165]
FE634_02880  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FE634_16625  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FE634_09035  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FE634_13205  formate dehydrogenase [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
noo00010  Glycolysis / Gluconeogenesis
noo00020  Citrate cycle (TCA cycle)
noo00030  Pentose phosphate pathway
noo00053  Ascorbate and aldarate metabolism
noo00071  Fatty acid degradation
noo00230  Purine metabolism
noo00250  Alanine, aspartate and glutamate metabolism
noo00260  Glycine, serine and threonine metabolism
noo00620  Pyruvate metabolism
noo00710  Carbon fixation by Calvin cycle
noo00750  Vitamin B6 metabolism
noo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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